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Align REBASE::M.VspI to PF01170 (UPF0020)

REBASE::M.VspI has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-15   41.5   0.3      7e-14   38.1   0.3    2.2  1  REBASE::M.VspI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.VspI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.3     7e-14     7e-14      29     139 ..     140     228 ..     135     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7e-14
                     TS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS-- CS
         UPF0020  29 gepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegev 122
                     + ++ DP CG+G +lIEa   g +                         ++yg D+d+ +++ +r+ +++ +   + ++++ d+ +   + e+++
  REBASE::M.VspI 140 ELTFCDPCCGTGNFLIEAVKRGFKPC-----------------------NIYGYDIDEVALEISRSRLKELCGVAESNIEKRDFLSASyQIEQKY 211
                     5689**************99999988.......................59******************9988888888888888777768889* PP

                     -EEEE----------HH CS
         UPF0020 123 dvivtnpPYGerlgskk 139
                     dvi tnpP+G++l +k 
  REBASE::M.VspI 212 DVIFTNPPWGKKLPKKD 228
                     ***********997764 PP



Or compare REBASE::M.VspI to CDD or PaperBLAST