REBASE::M.Vtu19109II has 575 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-15 41.8 0.0 1e-14 40.8 0.0 1.4 1 REBASE::M.Vtu19109II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Vtu19109II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.8 0.0 1e-14 1e-14 22 143 .. 217 350 .. 210 359 .. 0.79
Alignments for each domain:
== domain 1 score: 40.8 bits; conditional E-value: 1e-14
UPF0020 22 rlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygsDldrrvvqgareNa 96
+l + + g+++ DP CG+G++l+ + + + + l+ + + + +++ +a+ + +l+g+D+d +v+ + N+
REBASE::M.Vtu19109II 217 ELVQPQLGDKICDPACGTGGFLLGGYQYIVTQLA--LKAGTKNllpdedgfirtsVASTLTPDAQaiLDTSLFGFDIDGTMVRLGLMNL 303
6777899****************99876666553..33333336689999977775555555555334455****************** PP
UPF0020 97 ekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalek 143
g+++ +i++++ ++++ +eg++d+i +npP+ ++++ +++
REBASE::M.Vtu19109II 304 MMHGINEpQIDYKDTLSKSFE-EEGQYDIIMANPPFTGSIDKGDINDR 350
****987469***********.999************99998776665 PP
Or compare REBASE::M.Vtu19109II to CDD or PaperBLAST