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Align REBASE::M.Vvu61306I to PF01170 (UPF0020)

REBASE::M.Vvu61306I has 512 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
      1e-11   31.1   0.0    2.5e-11   29.8   0.0    1.6  1  REBASE::M.Vvu61306I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Vvu61306I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.5e-11   2.5e-11      19     140 ..     171     304 ..     166     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.5e-11
                          HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...........HHHHHHHHHHHH--EEEEES-HHHHHHHHHHHH CS
              UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle...........lkaeaeeearaelklygsDldrrvvqgareNae 97 
                           +v++ +++p++++ DP CG+ ++l  + +   ++ + +  e ++            l++  + +++  + ++g+D+d+ +++ +  N  
  REBASE::M.Vvu61306I 171 MMVEMLDVQPTDVICDPACGTAGFL-SRSMEYLTRTH-TSPESIYDdedgnpvytgdLLHDYQDHIN-SQMFWGFDFDSTMLRVSAMNML 257
                          59*******************9997.34555555553.22244444677789988876666665554.455******************9 PP

                          HTT-G.GGEEEEE--GGG--...STTS---EEEE----------HHH CS
              UPF0020  98 kagvg.dliefsqadaakLr...lkegevdvivtnpPYGerlgskka 140
                            gv+   i++++  ++++    ++e+ +d i++npP+  +l+++  
  REBASE::M.Vvu61306I 258 LHGVSaANITYQDSLNKSFVgqpQEENFFDKILANPPFKGSLDEQSV 304
                          99997257999999999998877777789*********999998765 PP



Or compare REBASE::M.Vvu61306I to CDD or PaperBLAST