PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Xor7331I to PF01170 (UPF0020)

REBASE::M.Xor7331I has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    6.6e-11   28.4   0.0    1.3e-10   27.4   0.0    1.4  1  REBASE::M.Xor7331I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Xor7331I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-10   1.3e-10      20     132 ..     174     279 ..     170     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.3e-10
                         HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHH..TT-GGGEEEE CS
             UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaek..agvgdliefs 108
                         +vr+ + k  e+ +DP CG+G++l  a   +++++            ++ae ea  +++++g+++++     a +N      +v  +i+  
  REBASE::M.Xor7331I 174 MVRMVDPKLHEKVMDPACGTGGFLTCAIEHKRQRY-----------VRTAEDEAILQASIFGVEKKPLPHLLATTNMVLhgIEVPSQIKHD 253
                         9***********************88777777777...........4677888889999******98666666666555005555666667 PP

                         E--GGG--..STTS---EEEE----- CS
             UPF0020 109 qadaakLr..lkegevdvivtnpPYG 132
                         +  a+ L    + + vd iv+npP+G
  REBASE::M.Xor7331I 254 NTLARPLIswGPGERVDCIVANPPFG 279
                         777788878766779**********9 PP



Or compare REBASE::M.Xor7331I to CDD or PaperBLAST