REBASE::M.Xor7342II has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-11 28.7 0.0 1.1e-10 27.7 0.0 1.4 1 REBASE::M.Xor7342II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Xor7342II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.7 0.0 1.1e-10 1.1e-10 20 132 .. 174 279 .. 170 289 .. 0.79
Alignments for each domain:
== domain 1 score: 27.7 bits; conditional E-value: 1.1e-10
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekag..vgdlief 107
+vr+ + k e+ +DP CG+G++l a +++++ ++ae ea +++++g+++++ a +N g v +i+
REBASE::M.Xor7342II 174 MVRMVDPKLHEKVMDPACGTGGFLTCAIEHKRQRY-----------VRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGieVPSQIKH 252
9***********************88777777777...........4677888889999******9866666666655555005566666 PP
UPF0020 108 sqadaakLr..lkegevdvivtnpPYG 132
+ a+ L + + vd iv+npP+G
REBASE::M.Xor7342II 253 DNTLARPLIswGPGERVDCIVANPPFG 279
7777788878766679**********9 PP
Or compare REBASE::M.Xor7342II to CDD or PaperBLAST