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Align REBASE::M.ZalSM2I to PF01170 (UPF0020)

REBASE::M.ZalSM2I has 538 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.3e-10   25.7   0.0    1.2e-09   24.2   0.0    1.7  1  REBASE::M.ZalSM2I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.ZalSM2I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.2e-09   1.2e-09      18     179 ..     166     333 ..     162     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.2e-09
                        HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEE CS
            UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdliefs 108
                         ++vr  + +pge+ +DP  G+ ++lI a    ++          + l   a++++  ++  ++g++l +   + a  N    g+++  e +
  REBASE::M.ZalSM2I 166 NSMVRCIQPQPGEVVQDPAAGTAGFLIAADRYIKDHSD-----DLFDLD--AKAQNFqRNKAFIGVELVPGTRRMALMNCLLHGMEGDDEGV 250
                        68*************************88766666663.....333443..33333314445******************999999888877 PP

                        E--GGG--...STTS---EEEE----------HHHH..HHHHH.......HHHHHHHHH-TT..-EEEEEESSHHHHHCC--- CS
            UPF0020 109 qadaakLr...lkegevdvivtnpPYGerlgskkal..ekLYs.......eflrelkrvlrgggrlvlltsenkalekaleer 179
                        +    +L    ++ ++ d+i++npP+G + g + ++  ++L+        +fl+ + r+l+ ggr+++++++n  +e+ ++++
  REBASE::M.ZalSM2I 251 VHLGNSLGmvgATLAKADIILANPPFGSSKGGEASItrDDLTYktsnkqlAFLQHIYRNLKPGGRAAVVLPDNVLFEAGVGNE 333
                        7777777766766679*************9999888667785413333335899999***************99999876665 PP



Or compare REBASE::M.ZalSM2I to CDD or PaperBLAST