REBASE::M.ZalSM2I has 538 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-10 26.1 0.0 9.5e-10 24.6 0.0 1.7 1 REBASE::M.ZalSM2I
Domain annotation for each sequence (and alignments):
>> REBASE::M.ZalSM2I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.6 0.0 9.5e-10 9.5e-10 18 179 .. 166 333 .. 162 346 .. 0.78
Alignments for each domain:
== domain 1 score: 24.6 bits; conditional E-value: 9.5e-10
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq 109
++vr + ++ge+ +DP G+ ++lI a ++ + l a+a+ +++++ ++g++l + + a N g+++ e ++
REBASE::M.ZalSM2I 166 NSMVRCIQPQPGEVVQDPAAGTAGFLIAADRYIKDHSD-----DLFDLDAKAQ-NFQRNKAFIGVELVPGTRRMALMNCLLHGMEGDDEGVV 251
68*************************88766666663.....3333333333.3334445******************9999998888777 PP
UPF0020 110 adaakLr...lkegevdvivtnpPYGerlgskkal..ekLYs.......eflrelkrvlrgggrlvlltaenkalekaleer 179
+L ++ ++ d+i++npP+G + g + ++ ++L+ +fl+ + r+l+ ggr+++++++n +e+ ++++
REBASE::M.ZalSM2I 252 HLGNSLGmvgATLAKADIILANPPFGSSKGGEASItrDDLTYktsnkqlAFLQHIYRNLKPGGRAAVVLPDNVLFEAGVGNE 333
777777766766679*************9999888667785413333335899999****************9999876665 PP
Or compare REBASE::M.ZalSM2I to CDD or PaperBLAST