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Align REBASE::M1.AgoG2I to PF01170 (UPF0020)

REBASE::M1.AgoG2I has 381 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      2e-12   33.3   0.1    2.1e-09   23.4   0.0    2.6  3  REBASE::M1.AgoG2I  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.AgoG2I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.1e-09   2.1e-09      27      53 ..      48      74 ..      31     108 .. 0.88
   2 !    7.0   0.0   0.00023   0.00023     106     133 ..     222     250 ..     216     256 .. 0.80
   3 ?   -3.5   0.0      0.39      0.39     148     170 ..     300     321 ..     294     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.1e-09
                       -TTS-EEETT-TTSHHHHHHHHHHTT- CS
            UPF0020 27 kpgepllDPmCGsGtilIEaallgani 53
                       k++ ++lDP+CGsGt l+Ea l   + 
  REBASE::M1.AgoG2I 48 KDNYVILDPFCGSGTTLVEASLRNLSS 74
                       67789***************9976655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00023
                        EEEE--GGG--.STTS---EEEE------ CS
            UPF0020 106 efsqadaakLr.lkegevdvivtnpPYGe 133
                        ++ + da++L   +++++d+i+t pPY +
  REBASE::M1.AgoG2I 222 KIISNDARSLIdIQSESIDMIITSPPYAN 250
                        56667888888767779**********75 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.39
                        HHHHHHHH-TT..-EEEEEESSH CS
            UPF0020 148 flrelkrvlrgggrlvlltsenk 170
                        +l+e+ rv+++  rl++++ +++
  REBASE::M1.AgoG2I 300 VLQEMYRVMKN-DRLCFIVIGDS 321
                        68899999988.88888877665 PP



Or compare REBASE::M1.AgoG2I to CDD or PaperBLAST