PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M1.Apa12260I to PF01170 (UPF0020)

REBASE::M1.Apa12260I has 506 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    3.7e-10   26.0   0.0    1.7e-09   23.8   0.0    2.0  1  REBASE::M1.Apa12260I  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.Apa12260I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.7e-09   1.7e-09      20     131 ..     192     292 ..     186     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.7e-09
                           HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
               UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlief 107
                           lvr+   k+ge+++DP CG+G++l+Ea   +++                   +++    klyg +++    + ar N+   g +d+ ++
  REBASE::M1.Apa12260I 192 LVRILAPKAGETIYDPACGTGGMLLEALHHVKEQG----------------GDENlMLGKLYGQEKNLTTSAIARMNLFLHGAEDF-HV 263
                           7889999*******************976666555................23343666799999999999999999999999886.66 PP

                           EE--GGG--.....STTS---EEEE---- CS
               UPF0020 108 sqadaakLr.....lkegevdvivtnpPY 131
                           +  d   ++      + + +d +++npP+
  REBASE::M1.Apa12260I 264 QRGDTLRVPafysgDNLATFDCVIANPPF 292
                           77788888888765333489999999998 PP



Or compare REBASE::M1.Apa12260I to CDD or PaperBLAST