REBASE::M1.Apa12260I has 506 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-10 26.3 0.0 1.2e-09 24.2 0.0 2.0 1 REBASE::M1.Apa12260I
Domain annotation for each sequence (and alignments):
>> REBASE::M1.Apa12260I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.2 0.0 1.2e-09 1.2e-09 20 131 .. 192 292 .. 186 298 .. 0.80
Alignments for each domain:
== domain 1 score: 24.2 bits; conditional E-value: 1.2e-09
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlief 107
lvr+ k+ge+++DP CG+G++l+Ea +++ +++ klyg +++ + ar N+ g +d+ ++
REBASE::M1.Apa12260I 192 LVRILAPKAGETIYDPACGTGGMLLEALHHVKEQG----------------GDENlMLGKLYGQEKNLTTSAIARMNLFLHGAEDF-HV 263
7889999*******************976666655................23343666799999999999999999999999886.66 PP
UPF0020 108 sqadaakLr.....lkegevdvivtnpPY 131
+ d ++ + + +d +++npP+
REBASE::M1.Apa12260I 264 QRGDTLRVPafysgDNLATFDCVIANPPF 292
77788889888765333489999999998 PP
Or compare REBASE::M1.Apa12260I to CDD or PaperBLAST