REBASE::M1.Cfr6267II has 508 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-14 38.9 0.0 1.1e-13 37.4 0.0 1.8 2 REBASE::M1.Cfr6267II
Domain annotation for each sequence (and alignments):
>> REBASE::M1.Cfr6267II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.4 0.0 1.1e-13 1.1e-13 8 55 .. 106 153 .. 103 192 .. 0.86
2 ? -3.6 0.0 0.42 0.42 119 133 .. 316 330 .. 297 332 .. 0.74
Alignments for each domain:
== domain 1 score: 37.4 bits; conditional E-value: 1.1e-13
UPF0020 8 gpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiap 55
++++ ++++A a++++ +k+g++ lDP+CGsGt l+E a lg +++
REBASE::M1.Cfr6267II 106 YKGKFNPQVAKAILNIFAAKPGQTVLDPFCGSGTSLVECAHLGIDAIG 153
57899*************************************999884 PP
== domain 2 score: -3.6 bits; conditional E-value: 0.42
UPF0020 119 egevdvivtnpPYGe 133
+ +d+ +t pPY
REBASE::M1.Cfr6267II 316 ANTFDLALTSPPYAT 330
457999999***976 PP
Or compare REBASE::M1.Cfr6267II to CDD or PaperBLAST