REBASE::M1.Cko10770II has 503 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-14 37.8 0.0 4.8e-13 35.3 0.0 2.1 2 REBASE::M1.Cko10770II
Domain annotation for each sequence (and alignments):
>> REBASE::M1.Cko10770II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.3 0.0 4.8e-13 4.8e-13 8 65 .. 100 157 .. 97 206 .. 0.73
2 ? -0.8 0.0 0.059 0.059 112 134 .. 307 328 .. 270 331 .. 0.68
Alignments for each domain:
== domain 1 score: 35.3 bits; conditional E-value: 4.8e-13
UPF0020 8 gpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyel 65
++++ ++++ +++++l+g+k+g+++l+P+CGsGt l Ea l g + + + +++l
REBASE::M1.Cko10770II 100 YKGKFNPQIVSSIINLCGIKQGDKILEPFCGSGTTLYEAMLNGISSDGFDYNPLACFL 157
578999**********************************999888765666666663 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.059
UPF0020 112 aakLrlkegevdvivtnpPYGer 134
+ L + + +d+ +t pPY +
REBASE::M1.Cko10770II 307 KKGLV-NYHGYDAAITSPPYATA 328
44455.4446999*******765 PP
Or compare REBASE::M1.Cko10770II to CDD or PaperBLAST