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Align REBASE::M1.Dac11109IV to PF01170 (UPF0020)

REBASE::M1.Dac11109IV has 499 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.9e-11   29.5   0.0    1.4e-10   27.3   0.0    2.0  1  REBASE::M1.Dac11109IV  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.Dac11109IV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-10   1.4e-10      19      97 ..     184     247 ..     179     293 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-10
                            HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHH CS
                UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNae 97 
                             +v++ + ++ge+++DP CG+G++l+Ea   +++   g +r+ ++               l+g +++    + ar N+ 
  REBASE::M1.Dac11109IV 184 LMVNILDPQEGESIYDPACGTGGMLLEAIHHVREHH-GDVRTLWGR--------------LFGQEKNLTTSAIARMNLI 247
                            69*************************987777666.888888876..............3444444444444444443 PP



Or compare REBASE::M1.Dac11109IV to CDD or PaperBLAST