PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M1.Mma5219I to PF01170 (UPF0020)

REBASE::M1.Mma5219I has 494 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    3.5e-11   29.3   0.0    1.1e-10   27.6   0.0    1.8  1  REBASE::M1.Mma5219I  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.Mma5219I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.1e-10   1.1e-10      22     131 ..     185     281 ..     178     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.1e-10
                          HHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGG..EEEEE CS
              UPF0020  22 rlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl..iefsq 109
                          ++ + ++ e+++DP CGsG++l+Ea   +++                     +++lklyg +++      ar N+   g++d+  i   +
  REBASE::M1.Mma5219I 185 NILKPQEKESIYDPACGSGGMLLEAVHYVNSSG-----------------GDERTLKLYGQEKNLTTSSIARINLFLHGIQDFqiIRGDT 257
                          55678999*****************99988888.................577999************************9862256667 PP

                          --GGG--..STTS---EEEE---- CS
              UPF0020 110 adaakLr..lkegevdvivtnpPY 131
                          + + +++   + +++d++++npP+
  REBASE::M1.Mma5219I 258 LRNPSFHegDQLSQFDIVIANPPF 281
                          77778886534449*********9 PP



Or compare REBASE::M1.Mma5219I to CDD or PaperBLAST