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Align REBASE::M1.PcaI to PF01170 (UPF0020)

REBASE::M1.PcaI has 504 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-10   27.1   0.0    9.5e-10   24.6   0.0    2.2  1  REBASE::M1.PcaI  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.PcaI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   9.5e-10   9.5e-10      19     131 ..     189     290 ..     184     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.5e-10
                      HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-- CS
          UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdliefsqad 111
                       +vr+   k+ge+++DP CG+G++l+Ea   +++                   +++    klyg +++      ar N+   g +d+ +++  d
  REBASE::M1.PcaI 189 LMVRILAPKAGETIYDPACGTGGMLLEALHHVKEHG----------------GDEHlMLGKLYGQEKNLTTSSIARMNLFLHGAEDF-HIERGD 265
                      5999999********************976666655................12222556699999999999999999999998875.788999 PP

                      GGG--.....STTS---EEEE---- CS
          UPF0020 112 aakLr.....lkegevdvivtnpPY 131
                         L+      + + +d +++npP+
  REBASE::M1.PcaI 266 TLRLPafysgDSLATFDCVIANPPF 290
                      9999988765444589999999998 PP



Or compare REBASE::M1.PcaI to CDD or PaperBLAST