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Align REBASE::M1.Sgr13350III to PF01170 (UPF0020)

REBASE::M1.Sgr13350III has 407 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    8.6e-12   31.3   0.0    2.6e-09   23.2   0.0    2.8  3  REBASE::M1.Sgr13350III  


Domain annotation for each sequence (and alignments):
>> REBASE::M1.Sgr13350III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.6e-09   2.6e-09       7      65 ..      70     136 ..      66     177 .. 0.68
   2 !    4.4   0.0    0.0014    0.0014     108     134 ..     265     293 ..     261     301 .. 0.79
   3 ?   -1.3   0.0     0.085     0.085     139     163 ..     325     349 ..     319     355 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.6e-09
                             S---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS..........H CS
                 UPF0020   7 ngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle..........l 65 
                              ++++ k+++A  lv+    + g + lDP+ G Gt++ Eaallg++++     + +             
  REBASE::M1.Sgr13350III  70 SYQGKFKPAMAHWLVKSFSPE-GGRVLDPLGGVGTVPFEAALLGRRAITNDKSPLA-AtvgaakmtppT 136
                             678999999999999987765.66788*******************9953333322.135666665552 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0014
                             EE--GGG--.STTS---EEEE----.--- CS
                 UPF0020 108 sqadaakLr.lkegevdvivtnpPY.Ger 134
                                d+++L+ +  + vd+i+t pP+ G r
  REBASE::M1.Sgr13350III 265 HHGDFRELPdKIADPVDAIITSPPFiGMR 293
                             678999999766679*********95555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.085
                             HHHHHHHHHHHHHHHHH-TT..-EE CS
                 UPF0020 139 kalekLYseflrelkrvlrgggrlv 163
                              +  + Ysef ++  +vl+ gg ++
  REBASE::M1.Sgr13350III 325 TKSTAVYSEFFSTCTQVLAPGGVMA 349
                             344889*************977654 PP



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