REBASE::M1.SpaD2II has 497 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-10 26.8 0.1 2.6e-09 23.2 0.1 2.5 1 REBASE::M1.SpaD2II
Domain annotation for each sequence (and alignments):
>> REBASE::M1.SpaD2II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.2 0.1 2.6e-09 2.6e-09 17 104 .. 180 250 .. 176 290 .. 0.64
Alignments for each domain:
== domain 1 score: 23.2 bits; conditional E-value: 2.6e-09
UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl 104
+ +v++ g ++ge+ +DP CG+G++l+E +++ + lkl g +++ + ar N+ g++d+
REBASE::M1.SpaD2II 180 VRLMVNVLGPQPGETVYDPACGTGGMLLETVHHVREHG-----------------GDPRLLKLKGQEKNLTTEAIARMNLYLHGMEDF 250
577**************************876666555.................222445555666666666666666666665554 PP
Or compare REBASE::M1.SpaD2II to CDD or PaperBLAST