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Align REBASE::M2.Asu14238II to PF01170 (UPF0020)

REBASE::M2.Asu14238II has 488 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.6e-11   29.7   0.0      2e-10   26.8   0.0    2.5  1  REBASE::M2.Asu14238II  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.Asu14238II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0     2e-10     2e-10      18     139 ..     178     286 ..     172     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-10
                            HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGE CS
                UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
                              + ++ + +pge+ +DP CGsG++l+  al  ++                   ++ ++lklyg +++    + ar N    g++++ 
  REBASE::M2.Asu14238II 178 KLMTMIMDPQPGESVYDPTCGSGGLLLNCALHLKEEG-----------------KEYRTLKLYGQEINLITSAIARMNMFMHGIEEFS 248
                            5689999***********************9988877.................4558999***********************9976 PP

                            EEEE--GGG...--.STTS---EEEE----------HH CS
                UPF0020 106 efsqadaak...Lr.lkegevdvivtnpPYGerlgskk 139
                             ++    a    L+  + + ++vi++npPY ++  ++k
  REBASE::M2.Asu14238II 249 IVRGDTLARpafLHnDQLKTFNVILANPPYSIKAWDQK 286
                            555433222122665333489*********98776665 PP



Or compare REBASE::M2.Asu14238II to CDD or PaperBLAST