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Align REBASE::M2.Bag18758II to PF01170 (UPF0020)

REBASE::M2.Bag18758II has 465 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    1.1e-13   37.4   0.1    5.1e-09   22.2   0.0    2.3  2  REBASE::M2.Bag18758II  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.Bag18758II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.1e-09   5.1e-09      28      54 ..      81     107 ..      78     140 .. 0.84
   2 !   12.8   0.0     4e-06     4e-06     106     136 ..     254     284 ..     247     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.1e-09
                            TTS-EEETT-TTSHHHHHHHHHHTT-- CS
                UPF0020  28 pgepllDPmCGsGtilIEaallgania 54 
                            ++++ lDP+CGsGt l+Ea l +++++
  REBASE::M2.Bag18758II  81 QTDVVLDPFCGSGTTLVEALLRSRQAI 107
                            6899***************99888776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4e-06
                            EEEE--GGG--STTS---EEEE--------- CS
                UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlg 136
                            ++ + daa+++l+ ++vd+ivt pPY ++++
  REBASE::M2.Bag18758II 254 SVIEGDAAEIKLPAHSVDLIVTSPPYLDSVD 284
                            567899*****9999***********99875 PP



Or compare REBASE::M2.Bag18758II to CDD or PaperBLAST