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Align REBASE::M2.BpsBEMII to PF01170 (UPF0020)

REBASE::M2.BpsBEMII has 543 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    4.2e-11   29.0   0.0    4.1e-10   25.8   0.0    2.5  2  REBASE::M2.BpsBEMII  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.BpsBEMII  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.056     0.056      87     148 ..     112     175 ..      62     184 .. 0.70
   2 !   25.8   0.0   4.1e-10   4.1e-10      19     133 ..     221     322 ..     214     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.056
                          HHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHH.HHHHHHH CS
              UPF0020  87 rvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsef 148
                          ++ +ga  N+ + + ++  ++ q+ +++++ ++ +  d i ++ P+ +r     +  ++L ++f
  REBASE::M2.BpsBEMII 112 QIPAGAHWNDVRQTPKNVGAAIQKAMRAIEtANPDLLDGIFGDAPWTNRERLPDETlKNLIEHF 175
                          5556778888888888888888888888885444478999999999988665443336666665 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 4.1e-10
                          HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEE CS
              UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
                           + +l   ++ge+++DP CG+G++lI  al + ++  g +                ++lklyg + +      ar N+   gv+d+  ++
  REBASE::M2.BpsBEMII 221 LMTQLLAPQAGESIYDPTCGTGGMLIS-ALDEVKRSGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEIIR 293
                          57888899******************6.566666765555................7899*************************98887 PP

                          E...--GGG--.STTS---EEEE------ CS
              UPF0020 109 q...adaakLr.lkegevdvivtnpPYGe 133
                              ad ++++  +  ++dvi++npPY +
  REBASE::M2.BpsBEMII 294 GdtlADPKHIEgDRLRQFDVILANPPYSI 322
                          51224555566744448**********75 PP



Or compare REBASE::M2.BpsBEMII to CDD or PaperBLAST