REBASE::M2.BpsBEMII has 543 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-11 29.2 0.0 3.5e-10 26.0 0.0 2.5 2 REBASE::M2.BpsBEMII
Domain annotation for each sequence (and alignments):
>> REBASE::M2.BpsBEMII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.9 0.0 0.061 0.061 90 149 .. 115 176 .. 63 184 .. 0.73
2 ! 26.0 0.0 3.5e-10 3.5e-10 19 133 .. 221 322 .. 214 328 .. 0.80
Alignments for each domain:
== domain 1 score: -0.9 bits; conditional E-value: 0.061
UPF0020 90 qgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsefl 149
+ga N+ + + ++ ++ q+ +++++ ++ + d i ++ P+ +r + ++L ++f+
REBASE::M2.BpsBEMII 115 AGAHWNDVRQTPKNVGAAIQKAMRAIEtANPDLLDGIFGDAPWTNRERLPDETlKNLIEHFS 176
67777888888888888888888888854444789999999999886654443366666655 PP
== domain 2 score: 26.0 bits; conditional E-value: 3.5e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +l ++ge+++DP CG+G++lI al + ++ g + ++lklyg + + ar N+ gv+d+ ++
REBASE::M2.BpsBEMII 221 LMTQLLAPQAGESIYDPTCGTGGMLIS-ALDEVKRSGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEIIR 293
57888899******************6.566666664555................7899*************************98887 PP
UPF0020 109 q...adaakLr.lkegevdvivtnpPYGe 133
ad ++++ + ++dvi++npPY +
REBASE::M2.BpsBEMII 294 GdtlADPKHIEgDRLRQFDVILANPPYSI 322
51224555566744448**********75 PP
Or compare REBASE::M2.BpsBEMII to CDD or PaperBLAST