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Align REBASE::M2.Bth238III to PF01170 (UPF0020)

REBASE::M2.Bth238III has 503 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    1.4e-11   30.6   0.0    1.3e-10   27.4   0.0    2.4  2  REBASE::M2.Bth238III  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.Bth238III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.051     0.051      88     149 ..      74     137 ..      25     145 .. 0.77
   2 !   27.4   0.0   1.3e-10   1.3e-10      19     133 ..     182     283 ..     175     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.051
                           HHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHH.HHHHHHHH CS
               UPF0020  88 vvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsefl 149
                           + +ga  N+ + + ++  ++ q+ +++++ ++ +  d i ++ P+ +r     +  ++L ++f+
  REBASE::M2.Bth238III  74 IPEGAHWNDVRQTPKNVGAAIQKAMRAIEsANPDLLDGIFGDAPWTNRERLPDETlKNLIEHFS 137
                           5577888888888888888888888999954444799999999999886654443366666655 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.3e-10
                           HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
               UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                            + +l   ++ge+++DP CG+G++lI  al + ++  g +                ++lklyg + +      ar N+   gv+d+  +
  REBASE::M2.Bth238III 182 LMTQLLAPQAGESIYDPTCGTGGMLIS-ALDEVKRSEGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEII 253
                           57888899******************6.577777774555................7899*************************9888 PP

                           EE...--GGG--.STTS---EEEE------ CS
               UPF0020 108 sq...adaakLr.lkegevdvivtnpPYGe 133
                           +    ad ++++  +  ++dvi++npPY +
  REBASE::M2.Bth238III 254 RGdtlADPKHIEgDRLRQFDVILANPPYSI 283
                           751224555666744448**********76 PP



Or compare REBASE::M2.Bth238III to CDD or PaperBLAST