REBASE::M2.Bth426III has 543 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-10 27.8 0.0 5.1e-10 25.5 0.0 2.2 1 REBASE::M2.Bth426III
Domain annotation for each sequence (and alignments):
>> REBASE::M2.Bth426III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.5 0.0 5.1e-10 5.1e-10 19 133 .. 221 322 .. 214 328 .. 0.80
Alignments for each domain:
== domain 1 score: 25.5 bits; conditional E-value: 5.1e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +l + ge+++DP CG+G++lI al + ++ g + ++lklyg + + ar N+ gv+d+ +
REBASE::M2.Bth426III 221 LMTQLLAPQGGESIYDPTCGTGGMLIS-ALDEVKRSGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEII 292
578888899*****************6.566666664555................7899*************************9888 PP
UPF0020 108 sq...adaakLr.lkegevdvivtnpPYGe 133
+ ad ++++ + ++dvi++npPY +
REBASE::M2.Bth426III 293 RGdtlADPKHIEgDRLRQFDVILANPPYSI 322
751224555566744448**********75 PP
Or compare REBASE::M2.Bth426III to CDD or PaperBLAST