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Align REBASE::M2.LhoZ1I to PF01170 (UPF0020)

REBASE::M2.LhoZ1I has 503 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.1e-11   29.1   0.0    2.2e-10   26.7   0.0    2.2  2  REBASE::M2.LhoZ1I  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.LhoZ1I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.14      0.14      93     148 ..      79     136 ..      63     144 .. 0.64
   2 !   26.7   0.0   2.2e-10   2.2e-10      19     133 ..     182     283 ..     175     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.14
                        HHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHH.HHHHHHH CS
            UPF0020  93 reNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsef 148
                          N+ +   ++  ++ q+ ++ ++ ++ +  d i ++ P+ +r     +  ++L ++f
  REBASE::M2.LhoZ1I  79 HWNDVRQAPKNVGAAIQKAMRTIEtANPDLLDGIFGDAPWTNRERLPDETlKNLIEHF 136
                        5555555555555556666666664333467889999999887654433335555555 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2.2e-10
                        HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE- CS
            UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
                         + +l   + ge+++DP CG+G++lI  al + ++a g +                ++lklyg + +      ar N+   gv+d+  ++  
  REBASE::M2.LhoZ1I 182 LMTQLLAPQTGESIYDPTCGTGGMLI-SALDEVKRAGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEIIRGD 256
                        57888899******************.5788889996666................7899*************************9877764 PP

                        -GGG--....STTS---EEEE------ CS
            UPF0020 111 daakLr....lkegevdvivtnpPYGe 133
                          a+ +     +  ++dvi++npPY +
  REBASE::M2.LhoZ1I 257 TLAEPKhiegDRLRQFDVILANPPYSI 283
                        444333344634448**********76 PP



Or compare REBASE::M2.LhoZ1I to CDD or PaperBLAST