REBASE::M2.LhoZ1I has 503 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-11 29.2 0.0 2e-10 26.8 0.0 2.2 2 REBASE::M2.LhoZ1I
Domain annotation for each sequence (and alignments):
>> REBASE::M2.LhoZ1I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 0.0 0.13 0.13 94 148 .. 80 136 .. 65 144 .. 0.63
2 ! 26.8 0.0 2e-10 2e-10 19 133 .. 182 283 .. 175 291 .. 0.81
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 0.13
UPF0020 94 eNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsef 148
N+ + ++ ++ q+ ++ ++ ++ + d i ++ P+ +r + ++L ++f
REBASE::M2.LhoZ1I 80 WNDVRQAPKNVGAAIQKAMRTIEtANPDLLDGIFGDAPWTNRERLPDETlKNLIEHF 136
555555555555555666666664333467889999999888654443336665555 PP
== domain 2 score: 26.8 bits; conditional E-value: 2e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
+ +l + ge+++DP CG+G++lI al + ++a g + ++lklyg + + ar N+ gv+d+ ++
REBASE::M2.LhoZ1I 182 LMTQLLAPQTGESIYDPTCGTGGMLI-SALDEVKRAGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEIIRGD 256
57888899******************.5788888886666................7899*************************9877764 PP
UPF0020 111 daakLr....lkegevdvivtnpPYGe 133
a+ + + ++dvi++npPY +
REBASE::M2.LhoZ1I 257 TLAEPKhiegDRLRQFDVILANPPYSI 283
444333344633448**********76 PP
Or compare REBASE::M2.LhoZ1I to CDD or PaperBLAST