REBASE::M2.MboI has 273 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-10 27.7 0.0 5.5e-09 22.1 0.0 2.3 2 REBASE::M2.MboI
Domain annotation for each sequence (and alignments):
>> REBASE::M2.MboI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.3 0.0 0.0031 0.0031 117 131 .. 28 42 .. 11 48 .. 0.73
2 ! 22.1 0.0 5.5e-09 5.5e-09 23 77 .. 204 270 .. 199 273 .] 0.81
Alignments for each domain:
== domain 1 score: 3.3 bits; conditional E-value: 0.0031
UPF0020 117 lkegevdvivtnpPY 131
+++++d+i ++pPY
REBASE::M2.MboI 28 FQDNSIDMIFADPPY 42
35669********** PP
== domain 2 score: 22.1 bits; conditional E-value: 5.5e-09
UPF0020 23 lagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearael 77
l+ ++++ +lDP++GsGt I + ll +n + + ++ e lk+e ++++r+++
REBASE::M2.MboI 204 LSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIGIEQELEFLElskrryheitpvLKNEFKQKIRKQI 270
7899****************************55554455558888888888887888887777655 PP
Or compare REBASE::M2.MboI to CDD or PaperBLAST