PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M2.MboI to PF01170 (UPF0020)

REBASE::M2.MboI has 273 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-10   27.8   0.0    5.1e-09   22.2   0.0    2.3  2  REBASE::M2.MboI  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.MboI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0033    0.0033     117     131 ..      28      42 ..      11      48 .. 0.73
   2 !   22.2   0.0   5.1e-09   5.1e-09      23      77 ..     204     270 ..     199     273 .] 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0033
                      STTS---EEEE---- CS
          UPF0020 117 lkegevdvivtnpPY 131
                       +++++d+i ++pPY
  REBASE::M2.MboI  28 FQDNSIDMIFADPPY 42 
                      35679********** PP

  == domain 2  score: 22.2 bits;  conditional E-value: 5.1e-09
                      HTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS............HHHHHHHHHHHH- CS
          UPF0020  23 lagwkpgepllDPmCGsGtilIEaallganiapgllrefvle............lkaeaeeearael 77 
                      l+  ++++ +lDP++GsGt  I + ll +n + +    ++le            lk+e ++++r+++
  REBASE::M2.MboI 204 LSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIGIEQELEFLElskrryheitpvLKNEFKQKIRKQI 270
                      7899****************************55554455558888888888888888888877655 PP



Or compare REBASE::M2.MboI to CDD or PaperBLAST