REBASE::M2.Pae95I has 507 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-11 29.1 0.0 2.2e-10 26.7 0.0 2.2 2 REBASE::M2.Pae95I
Domain annotation for each sequence (and alignments):
>> REBASE::M2.Pae95I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.0 0.21 0.21 102 136 .. 92 127 .. 67 147 .. 0.63
2 ! 26.7 0.0 2.2e-10 2.2e-10 19 133 .. 186 287 .. 179 295 .. 0.79
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 0.21
UPF0020 102 gdliefsqadaakLr.lkegevdvivtnpPYGerlg 136
+ ++ q +++++ ++ + d i ++ P+ +r
REBASE::M2.Pae95I 92 RNVGAAIQRAMRAIEsANPDMLDGIFGDAPWTNRDR 127
555555555566666433346788999999987754 PP
== domain 2 score: 26.7 bits; conditional E-value: 2.2e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq. 109
+ +l + ge+++DP CG+G++lI al + ++ g + ++lklyg + + ar N+ gv+d+ ++
REBASE::M2.Pae95I 186 LMTQLLAPQVGESIYDPTCGTGGMLIS-ALDEVKRSGGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEIVRGd 260
57888899******************6.566666664555................7899*************************9877651 PP
UPF0020 110 ..adaakLr.lkegevdvivtnpPYGe 133
ad ++++ + ++dvi++npPY +
REBASE::M2.Pae95I 261 tlADPKHIEdDRLRQFDVILANPPYSI 287
224455566533349**********76 PP
Or compare REBASE::M2.Pae95I to CDD or PaperBLAST