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Align REBASE::M2.Rma10893II to PF01170 (UPF0020)

REBASE::M2.Rma10893II has 691 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    3.9e-15   42.2   0.0    1.3e-14   40.4   0.0    1.8  2  REBASE::M2.Rma10893II  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.Rma10893II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.26      0.26     139     159 ..     251     271 ..     248     295 .. 0.79
   2 !   40.4   0.0   1.3e-14   1.3e-14      21     135 ..     331     463 ..     328     476 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.26
                UPF0020 139 kalekLYseflrelkrvlrgg 159
                            k++e+L+ e+ +++k+++rg+
  REBASE::M2.Rma10893II 251 KRIEELFTEVKSQFKNIFRGN 271
                            678999999999999999984 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.3e-14
                UPF0020  21 vrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.........lkaeaeeear.aelklygsDldrrvvqgareNaek 98 
                            v++ + k+ e+llDP CG+G++l+  a+lg      ++r++             ++  e+ ++ a ++++g+D+d+ ++++a+ N   
  REBASE::M2.Rma10893II 331 VEMLDPKESETLLDPACGTGGFLV--ATLGHMLK--KFRDEQNTqvgnestteFLNVHERLKEyAAANVFGADFDPFLIRAAQMNMVL 414
                            6778999****************9..66666666..56665555566677776444444444435666******************99 PP

                UPF0020  99 agvg.......dliefsqadaakLr.....lkegevdvivtnpPYGerl 135
                            ag g       ++ ef     a+L+      + g+vd+i+tnpP+G  +
  REBASE::M2.Rma10893II 415 AGDGrghiynvNSLEFPLGHLADLPsakkeIPLGSVDIIATNPPFGSDI 463
                            98652211111345566667899998644334469***********876 PP



Or compare REBASE::M2.Rma10893II to CDD or PaperBLAST