REBASE::M2.Rma12379II has 691 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-15 42.2 0.0 1.3e-14 40.4 0.0 1.8 2 REBASE::M2.Rma12379II
Domain annotation for each sequence (and alignments):
>> REBASE::M2.Rma12379II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 0.26 0.26 139 159 .. 251 271 .. 248 295 .. 0.79
2 ! 40.4 0.0 1.3e-14 1.3e-14 21 135 .. 331 463 .. 328 476 .. 0.72
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 0.26
UPF0020 139 kalekLYseflrelkrvlrgg 159
k++e+L+ e+ +++k+++rg+
REBASE::M2.Rma12379II 251 KRIEELFTEVKSQFKNIFRGN 271
678999999999999999984 PP
== domain 2 score: 40.4 bits; conditional E-value: 1.3e-14
UPF0020 21 vrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.........lkaeaeeear.aelklygsDldrrvvqgareNaek 98
v++ + k+ e+llDP CG+G++l+ a+lg ++r++ ++ e+ ++ a ++++g+D+d+ ++++a+ N
REBASE::M2.Rma12379II 331 VEMLDPKESETLLDPACGTGGFLV--ATLGHMLK--KFRDEQNTqvgnestteFLNVHERLKEyAAANVFGADFDPFLIRAAQMNMVL 414
6778999****************9..66666666..56665555566677776444444444435666******************99 PP
UPF0020 99 agvg.......dliefsqadaakLr.....lkegevdvivtnpPYGerl 135
ag g ++ ef a+L+ + g+vd+i+tnpP+G +
REBASE::M2.Rma12379II 415 AGDGrghiynvNSLEFPLGHLADLPsakkeIPLGSVDIIATNPPFGSDI 463
98652211111345566667899998644334469***********876 PP
Or compare REBASE::M2.Rma12379II to CDD or PaperBLAST