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Align SwissProt::O94636 to PF01170 (UPF0020)

SwissProt::O94636 has 469 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.2e-12   34.0   0.0    1.2e-10   27.6   0.0    2.3  1  SwissProt::O94636  


Domain annotation for each sequence (and alignments):
>> SwissProt::O94636  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.2e-10   1.2e-10       4     139 ..     213     329 ..     211     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.2e-10
                        S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHH.... CS
            UPF0020   4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqg.... 91 
                        R + g ++  ++L+ +  ++a + pg+ ++DP+ G+G++l      ga+                            gsD+d r ++g    
  SwissProt::O94636 213 RSYIGITSFDAELSLVTAQMAMAAPGKLIYDPFVGTGSFLYTCSFFGAHTL--------------------------GSDIDGRQMRGkngr 278
                        788889999999*************************************99..........................888888888762222 PP

                        .HHHHHHHTT-GGG.EEEEE--GGG--.STTS---EEEE----------HH CS
            UPF0020  92 .areNaekagvgdl.iefsqadaakLr.lkegevdvivtnpPYGerlgskk 139
                          ++N ++++++ +  +  + d+++ + +k+   d+iv++pPYG r g+kk
  SwissProt::O94636 279 sIKSNFRQYKLSPFfLDTFTGDVTNCPlRKNLLLDAIVCDPPYGVRAGAKK 329
                        2589******98752577778888877557779***************987 PP



Or compare SwissProt::O94636 to CDD or PaperBLAST