PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P85107 to PF01170 (UPF0020)

SwissProt::P85107 has 850 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.7e-10   26.4   0.0    1.1e-09   24.4   0.0    2.0  1  SwissProt::P85107  


Domain annotation for each sequence (and alignments):
>> SwissProt::P85107  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-09   1.1e-09      30     132 ..     686     761 ..     669     769 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-09
                        S-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS- CS
            UPF0020  30 epllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkege 121
                        + ++D +CG G+  I  al g++++                          ++D+d+  ++ ar+Nae +gv+d+ief + d+  L  +  +
  SwissProt::P85107 686 DIIVDAFCGVGGNTIQFALTGKRVI--------------------------AIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLA-PCLK 750
                        5577777777777777777777777..........................9********************************999.8889 PP

                        --EEEE----- CS
            UPF0020 122 vdvivtnpPYG 132
                         dv+   pP+G
  SwissProt::P85107 751 ADVVFLSPPWG 761
                        9*********9 PP



Or compare SwissProt::P85107 to CDD or PaperBLAST