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Align SwissProt::Q54BW1 to PF01170 (UPF0020)

SwissProt::Q54BW1 has 561 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    3.5e-15   42.3   0.1    7.8e-13   34.7   0.1    3.5  2  SwissProt::Q54BW1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q54BW1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   7.8e-13   7.8e-13      29     137 ..     293     436 ..     249     446 .. 0.71
   2 ?    1.3   0.0     0.013     0.013     139     185 ..     491     537 ..     487     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 7.8e-13
            UPF0020  29 gepllDPmCGsGtilIEaallganiapgllrefvye................lkaeaeeearaelk...lygsDldrrvvqgareNaekagv 101
                         + + DP+ GsGt+  Ea  +  ++ p    + +                   ++ +++ + + +k   l+gsD+d+++++ +  N++k g 
  SwissProt::Q54BW1 293 KTNIWDPFVGSGTLIQEAISMLLKAKPSSCTNYKRSfqferfknhsterylkYLESINKPISPLIKntiLIGSDIDQKAIDSSIFNLSKQGY 384
                        35799**************999999887653333224567******99987777777777775555667*********************99 PP

            UPF0020 102 gd.liefsqadaakLr...............lkegevdvivtnpPYGerlgs 137
                        ++  i+f + d++++                +++++  +i+tn+PYG r+ +
  SwissProt::Q54BW1 385 QHeNIKFFKGDFKSIYldqinidnsldddgdNNNNKPFTIITNLPYGTRVLN 436
                        76269****999988766776666665655433444459*********9865 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.013
            UPF0020 139 kalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvk 185
                        k+l++L++ f++ +++  ++  r v+++++n+ ++++  ++  ++++
  SwissProt::Q54BW1 491 KDLRDLFKRFGDMIHESNESVLRDVFVLNGNSHFQSISTNNGKNNFE 537
                        67899***********999999*************999888776665 PP



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