PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9WYV8 to PF01170 (UPF0020)

SwissProt::Q9WYV8 has 282 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.2e-11   28.7   0.0    8.6e-11   28.0   0.0    1.3  1  SwissProt::Q9WYV8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9WYV8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   8.6e-11   8.6e-11      76     134 ..     144     203 ..     115     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.6e-11
            UPF0020  76 elklygsDldrrvvqgareNaekagvgdliefsqadaa.kLrlkegevdvivtnpPYGer 134
                        ++ +++ D  +++v+ ar+Nae+ gv+d+  +++ ++   +++k +++++i++npPY ++
  SwissProt::Q9WYV8 144 DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLePFKEKFASIEMILSNPPYVKS 203
                        455899*****************************98625889999***********886 PP



Or compare SwissProt::Q9WYV8 to CDD or PaperBLAST