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Align VIMSS10160727 to PF01170 (UPF0020)

VIMSS10160727 has 464 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-12   33.8   0.0      3e-12   32.8   0.0    1.5  1  VIMSS10160727  


Domain annotation for each sequence (and alignments):
>> VIMSS10160727  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0     3e-12     3e-12      19     145 ..     160     280 ..     157     339 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3e-12
                    HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG CS
        UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaak 114
                    a+v+  + + ++ + DP  G+G++lI a    ++i     +++ +  +++ e+++  + +l g++l ++  + +  N+    ++   +f++ d  +
  VIMSS10160727 160 AIVKAVDPDHDDDIHDPAAGTGGFLIHAF---EHILE---KTNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDLQ-PQNFEVGDSLS 248
                    89999*********************884...44442...222222333333333466669*****************998876.6799999**** PP

                    --.STTS---EEEE----------HHHHHHHH CS
        UPF0020 115 Lr.lkegevdvivtnpPYGerlgskkalekLY 145
                    L  ++++++dvi+tnpPYG   ++k+a +++ 
  VIMSS10160727 249 LGpHTDESYDVILTNPPYGGNQKKKRARDDFM 280
                    *988888**************99999987664 PP



Or compare VIMSS10160727 to CDD or PaperBLAST