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Align VIMSS10342689 to PF01170 (UPF0020)

VIMSS10342689 has 735 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-47  147.8   0.0    1.3e-46  144.9   0.0    2.0  2  VIMSS10342689  


Domain annotation for each sequence (and alignments):
>> VIMSS10342689  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.3e-46   1.3e-46       1     195 [.     164     378 ..     164     380 .. 0.92
   2 ?    0.5   0.0     0.022     0.022      75     130 ..     576     635 ..     555     675 .. 0.69

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.3e-46
                    -SSS-SS---SS-HHHHHHHHHHTT-....-TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH...HH CS
        UPF0020   1 RgyRefngpapLketLAaalvrlagw....kpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear...ae 76 
                    RgyR++   apLke+LAaal+ +agw     +g  llDPmCGsGt+ IE+al++a+iapgllre++++             l+aea+ +     ++
  VIMSS10342689 164 RGYRDAGSAAPLKENLAAALLLRAGWpeiaAEGGALLDPMCGSGTLIIEGALIAADIAPGLLRERFGFhgwtqhdepawqrLLAEARLRRTaglKR 259
                    9*************************5444579*********************************************988666666655544533 PP

                    --.EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
        UPF0020  77 lk.lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenk 170
                    l  l+g D ++++++++   +e+ag+++l +f+  +  + +  +e++ ++++ npPYGerlg+ ++l +LY  +++ lk+++ g  + +++++++ 
  VIMSS10342689 260 LGsLRGYDVNPNAIRTSLHHLERAGLAGLAHFERRELSDCHpGREDDEGLVIVNPPYGERLGADEDLTQLYARLGSVLKERFVG--WRAAVFTSSP 353
                    336**************************************97777899*********************************99..********** PP

                    HHHHCC---ESEEEEEEETTEEEEE CS
        UPF0020 171 alekaleeralrkvkeknvklglll 195
                    +l k l+ ra+r   ++n++++++l
  VIMSS10342689 354 ELGKSLGLRATRIHSLYNGPIECRL 378
                    **********************986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.022
                    HH--EEEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--GGG--.....STTS---EEEE--- CS
        UPF0020  75 aelklygsDldrrvvqgareNaekagvgdlie.fsqadaakLr.....lkegevdvivtnpP 130
                      ++   +Dl r +++ a +N+e  g+ +  + + qad    r     + +  +d+i  +pP
  VIMSS10342689 576 GAASTTTVDLSRTYLEWAGRNLELNGIRGPNHqLIQADCL--RwidsmAGQRRFDLIFLDPP 635
                    55668899******************98875414555544..33345456668899988888 PP



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