PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS106953 to PF01170 (UPF0020)

VIMSS106953 has 199 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-10   27.7   0.1    7.5e-10   24.9   0.1    2.0  1  VIMSS106953  


Domain annotation for each sequence (and alignments):
>> VIMSS106953  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   7.5e-10   7.5e-10      25     125 ..      37     115 ..      23     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.5e-10
                  T--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS- CS
      UPF0020  25 gwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkege 121
                  ++k+g++ lD  CG+G+i +Ea ll+ n                         ++yg+D+++++++ +r+Naek gv + i + + +a ++    +++
  VIMSS106953  37 RIKKGDKVLDIGCGTGSITVEASLLVGNSG-----------------------RVYGIDKEEKAINLTRRNAEKFGVLNNIVLIKGEAPAILsTINEK 111
                  67999***********************99.......................59**************************99999987765455667 PP

                  --EE CS
      UPF0020 122 vdvi 125
                  +d i
  VIMSS106953 112 FDRI 115
                  7766 PP



Or compare VIMSS106953 to CDD or PaperBLAST