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Align VIMSS1147414 to PF01170 (UPF0020)

VIMSS1147414 has 522 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-10   26.9   0.0    1.7e-09   23.8   0.0    2.2  1  VIMSS1147414  


Domain annotation for each sequence (and alignments):
>> VIMSS1147414  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.7e-09   1.7e-09      18     134 ..     199     293 ..     195     299 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.7e-09
                   HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG CS
       UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaak 114
                    alv + + ++g++++DP CGsG++ + aa    +                        l++yg ++  + ++ ++ N+    +++  e  +    +
  VIMSS1147414 199 QALVAMLEPEDGSKIFDPACGSGGMFVQAAEFTDDKE---------------------SLSFYGQESVDQNLRLCKMNLLMHDLQGDLESGDSLLND 274
                   699***************************9998888.....................6889************************99999998888 PP

                   --STTS---EEEE------- CS
       UPF0020 115 LrlkegevdvivtnpPYGer 134
                    + +  + d +++npP+ +r
  VIMSS1147414 275 KH-EGLKADYVIANPPFNIR 293
                   88.55599********9887 PP



Or compare VIMSS1147414 to CDD or PaperBLAST