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Align VIMSS133218 to PF01170 (UPF0020)

VIMSS133218 has 390 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-58  181.8   0.0    9.1e-58  181.3   0.0    1.2  1  VIMSS133218  


Domain annotation for each sequence (and alignments):
>> VIMSS133218  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.0   9.1e-58   9.1e-58       1     195 [.     172     376 ..     172     378 .. 0.96

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 9.1e-58
      UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDl 84 
                  RgyR  +g+ap+ke++Aaa+++l++w +++pl+DP CGsGt+ IEa ++++++apgl r+f++e            +++ea ++ ++el+  ++g D+
  VIMSS133218 172 RGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEewnwisdrliqeVRTEAAKKVERELEldIMGCDI 269
                  9*************************************************************************999999999999777667****** PP

      UPF0020  85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralr 182
                  d+r+v+ a+ Na++agv++ i+f+q+ +++Lr +++ ++vi++npPYGerl++   + kLY e+++ ++  l++  ++ +++++++a+e+ ++++a +
  VIMSS133218 270 DARMVEIAKANAQAAGVAGDITFKQMRVQDLR-SDKINGVIISNPPYGERLSDDAGVTKLYAEMGQVFAP-LKT--WSKFILTSDEAFESKYGSQADK 363
                  ********************************.7779********************************9.999..********************** PP

      UPF0020 183 kvkeknvklglll 195
                  k+k++n+ l+ +l
  VIMSS133218 364 KRKLYNGTLKVDL 376
                  *******998765 PP



Or compare VIMSS133218 to CDD or PaperBLAST