VIMSS140318 has 306 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-11 30.5 0.0 2.5e-11 29.7 0.0 1.3 1 VIMSS140318
Domain annotation for each sequence (and alignments):
>> VIMSS140318
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.0 2.5e-11 2.5e-11 78 167 .. 151 244 .. 137 255 .. 0.79
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 2.5e-11
UPF0020 78 k.lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYs.......eflrelkrvlrgggrlvllta 167
+ ++g D ++++v++ar N + g ++++e+++ d L +eg d+iv+npP+ + + +LY+ +flr + ++l+ +g + l+++
VIMSS140318 151 PsVIGTDTNPKAVACARANIARLGFEKQVEIRETD---LF-PEGFADLIVCNPPWLPAKPTSAVESALYDpesamlaAFLRDAPKHLNPDGEIRLIIS 244
3499*****************************55...55.78889*********9988888877888863333333677777777777777776665 PP
Or compare VIMSS140318 to CDD or PaperBLAST