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Align VIMSS144846 to PF01170 (UPF0020)

VIMSS144846 has 706 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-70  221.0   0.0      2e-65  206.3   0.0    2.3  2  VIMSS144846  


Domain annotation for each sequence (and alignments):
>> VIMSS144846  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0     2e-65     2e-65       1     196 [.     162     375 ..     162     376 .. 0.96
   2 !   12.5   0.0     5e-06     5e-06      79     170 ..     564     658 ..     526     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 2e-65
      UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear.....aelk.l 79 
                  RgyR+ +g+apLke+LAaa+++++gw++g+p++DPmCGsGt+lIEaa++++++apgl+r ++++             l +ea+ +ar     +  + +
  VIMSS144846 162 RGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVDPMCGSGTLLIEAAMMASDRAPGLHRGHWGFtawnafnealwreLTTEAQVRARrglleTS-SrF 258
                  9************************************************************************999977888888877776333.36* PP

      UPF0020  80 ygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkaleka 175
                  +gsD+drrv++ ar Na++agv++li+f++ d+ kL   l+eg v+++++npPYGerl+s++al +L++ f+r +k  + g  + ++l++++ +l ++
  VIMSS144846 259 FGSDIDRRVIEMARANARRAGVAELITFNANDISKLVnpLPEGPVGTVISNPPYGERLESEPALIALHNMFGRMMKTAFGG--WRLSLFSASPELLSC 354
                  ************************************9999*************************************9999..*************** PP

      UPF0020 176 leeralrkvkeknvklglllk 196
                  l+ ra r++k+kn++l++++k
  VIMSS144846 355 LQLRADREFKAKNGPLDCVQK 375
                  ******************997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5e-06
      UPF0020  79 lygsDldrrvvqgareNaekagvgdl.iefsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaenk 170
                     +D+ r +++ a++N++  g++++   + qad  + L ++++++dvi  +pP     +r++++ ++++ +  +++elkr lr+  +  +++++nk
  VIMSS144846 564 TTTVDMSRTYLEWAEKNLRVNGLTGQqHRLIQADCLSwLSNTDEQFDVIFIDPPtfsNSKRMETTFDVQRDHLVLMKELKRLLRR--KGTIMFSNNK 658
                  5679***************99997751567888877625578889*********6444799************************..6666666665 PP



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