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Align VIMSS144846 to PF01170 (UPF0020)

VIMSS144846 has 706 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-71  225.2   0.0      1e-66  210.5   0.0    2.3  2  VIMSS144846  


Domain annotation for each sequence (and alignments):
>> VIMSS144846  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5   0.0     1e-66     1e-66       1     196 [.     162     375 ..     162     376 .. 0.96
   2 !   12.4   0.0   5.2e-06   5.2e-06      79     170 ..     564     658 ..     527     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 1e-66
                  -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH....HH--.EE CS
      UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear....aelk.ly 80 
                  RgyR+ +g+apLke+LAaa+++++gw+pg+p++DPmCGsGt+lIEaa++++++apgl+r ++++             l +ea+ +ar    ++ + ++
  VIMSS144846 162 RGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVDPMCGSGTLLIEAAMMASDRAPGLHRGHWGFtawnafnealwreLTTEAQVRARrgllETSSrFF 259
                  9************************************************************************99998888888888777633336** PP

                  EEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC CS
      UPF0020  81 gsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekal 176
                  gsD+drrv++ ar Na++agv++li+f++ d+ kL   l+eg v+++++npPYGerl+s++al +L++ f+r +k  + g  + ++l+s++ +l ++l
  VIMSS144846 260 GSDIDRRVIEMARANARRAGVAELITFNANDISKLVnpLPEGPVGTVISNPPYGERLESEPALIALHNMFGRMMKTAFGG--WRLSLFSASPELLSCL 355
                  ***********************************9999*************************************9999..**************** PP

                  ---ESEEEEEEETTEEEEEE CS
      UPF0020 177 eeralrkvkeknvklglllk 196
                  + ra r++k+kn++l++++k
  VIMSS144846 356 QLRADREFKAKNGPLDCVQK 375
                  *****************997 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.2e-06
                  EEEEES-HHHHHHHHHHHHHTT-GGG.EEEEE--GGG.--STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
      UPF0020  79 lygsDldrrvvqgareNaekagvgdl.iefsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltsenk 170
                     +D+ r +++ a++N++  g++++   + qad  + L ++++++dvi  +pP     +r++++ ++++ +  +++elkr lr+  +  +++s+nk
  VIMSS144846 564 TTTVDMSRTYLEWAEKNLRVNGLTGQqHRLIQADCLSwLSNTDEQFDVIFIDPPtfsNSKRMETTFDVQRDHLVLMKELKRLLRR--KGTIMFSNNK 658
                  5679***************99987651567888877625578889*********6444799************************..6666666665 PP



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