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Align VIMSS1746352 to PF01170 (UPF0020)

VIMSS1746352 has 222 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-13   35.0   0.7    2.5e-10   26.5   0.2    2.9  2  VIMSS1746352  


Domain annotation for each sequence (and alignments):
>> VIMSS1746352  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   2.5e-10   2.5e-10      22     131 ..      24     105 ..      19     108 .. 0.91
   2 !    4.5   0.0    0.0014    0.0014      27      49 ..     131     154 ..     127     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.5e-10
                   HHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--ST CS
       UPF0020  22 rlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlk 118
                   +++g  pg++ lD   GsG ++I aa lga+ +                          ++D+ +r+v+ a  Na +a  +  + + +++ a L+  
  VIMSS1746352  24 ERSGEVPGRRVLDLCTGSGVVAIAAAHLGAEHV-------------------------TALDICPRAVEYATANAASAAADVDVRLGTWNEA-LN-- 92 
                   678888999999988999999999999999988.........................69******************************99.77.. PP

                   TS---EEEE---- CS
       UPF0020 119 egevdvivtnpPY 131
                    + +d++v+npPY
  VIMSS1746352  93 WEPFDLVVCNPPY 105
                   559********** PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0014
                   -TTS-EEETT-T.TSHHHHHHHHH CS
       UPF0020  27 kpgepllDPmCG.sGtilIEaall 49 
                    +g+++lDP+C   G++l E++ l
  VIMSS1746352 131 ADGRMILDPLCDvAGAMLAEGGSL 154
                   5899*******6479999999876 PP



Or compare VIMSS1746352 to CDD or PaperBLAST