VIMSS2092704 has 495 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-12 32.5 0.1 2.2e-10 26.7 0.1 2.8 2 VIMSS2092704
Domain annotation for each sequence (and alignments):
>> VIMSS2092704
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.7 0.1 2.2e-10 2.2e-10 17 131 .. 191 287 .. 186 307 .. 0.61
2 ? -3.1 0.0 0.29 0.29 147 179 .. 318 350 .. 317 358 .. 0.77
Alignments for each domain:
== domain 1 score: 26.7 bits; conditional E-value: 2.2e-10
UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaall.ganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq.ad 111
++ l +l ++kdg+ ++DP CGsG++lI aa g+n ++ +e++ ++ +l+ ++++ N+ + ++gd+i ++
VIMSS2092704 191 SSLLAMLVQAKDGDEIYDPTCGSGSLLIKAAKEiGSNNFAIYG-----------QERNSTTHSLCRMNMFLH-----DINDANIQLGDTIRNPRiLE 271
566889999**********************751555554333...........222223333333443333.....33445555555554433033 PP
UPF0020 112 aakLrlkegevdvivtnpPY 131
+ kL+ ++dv+v+npP+
VIMSS2092704 272 NDKLK----KFDVVVANPPF 287
33444....67777777777 PP
== domain 2 score: -3.1 bits; conditional E-value: 0.29
UPF0020 147 eflrelkrvlrgggrlvlltaenkalekaleer 179
+f + + l+++gr+++++++ + a+e +
VIMSS2092704 318 AFIQHMLASLNESGRMAVVVPHGVLFRGAAEGK 350
577888888999999999999888887777655 PP
Or compare VIMSS2092704 to CDD or PaperBLAST