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Align VIMSS2092798 to PF01170 (UPF0020)

VIMSS2092798 has 718 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-49  154.8   0.0    4.6e-48  149.7   0.0    2.3  2  VIMSS2092798  


Domain annotation for each sequence (and alignments):
>> VIMSS2092798  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   4.6e-48   4.6e-48       1     194 [.     163     375 ..     163     378 .. 0.87
   2 !    2.7   0.0    0.0049    0.0049      67     130 ..     568     634 ..     544     663 .. 0.76

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 4.6e-48
                   -SSS-SS---SS-HHHHHHHHHHTT--TTS-.....EEETT-TTSHHHHHHHHHHTT--TTTT.----SS............HHHHHHHHHHHH--. CS
       UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgep.....llDPmCGsGtilIEaallganiapgll.refvle............lkaeaeeearaelk. 78 
                   R yR+f+g+apLke+LAaa++  agw ++ +     l+DPmCGsGtilIEaal+++niap ll +ef+++            l++ a+++++++   
  VIMSS2092798 163 RSYRQFQGQAPLKESLAAAILIKAGWLEELKkhqpiLIDPMCGSGTILIEAALMAKNIAPVLLnKEFKIFnskfhnkelwdnLLEIAKNSQKVTNAi 259
                   89************************765422222389**********************97614555559*******9997666666666644445 PP

                   EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE--------..--HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHH CS
       UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerl..gskkalekLYseflrelkrvlrgggrlvlltsenkale 173
                   ++g+D+d++v+++a++N  +agv+d ++++  d+++L+++ ++ ++ivtnpPYGerl  ++  +l ++++ f+++l++ + g  + v+++++  +  
  VIMSS2092798 260 ICGFDIDNNVLDKAQRNIYQAGVEDVVTVKRQDIRDLENEFESEGLIVTNPPYGERLygDQLDELLDIFNGFGDRLSQDFYG--WKVAVLTSFADSI 354
                   9*************************************9999**************943455678999************99..************* PP

                   HCC---ESEEEEEEETTEEEE CS
       UPF0020 174 kaleeralrkvkeknvklgll 194
                   k ++ r++++ k +n+ +++ 
  VIMSS2092798 355 KEMQLRTTKRNKFYNGAIETI 375
                   **************9999876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0049
                   HHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-G.GGEEEEE--G.GG--STTS---EEEE--- CS
       UPF0020  67 aeaeeear.aelklygsDldrrvvqgareNaekagvg.dliefsqada.akLrlkegevdvivtnpP 130
                   ++a  +a  + +k   +D+ + +++ +++N e  +++ ++ +f qad    L+ +++++dvi  +pP
  VIMSS2092798 568 CTASVHAAlKGAKTTSVDMSNTYLEWGKNNFELNKLDiKKHSFIQADCiSWLKTNKDKFDVIFLDPP 634
                   45555555566778999999********99887776533455666665155777788*********9 PP



Or compare VIMSS2092798 to CDD or PaperBLAST