VIMSS220385 has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-10 25.6 0.0 1.4e-09 24.1 0.0 1.7 2 VIMSS220385
Domain annotation for each sequence (and alignments):
>> VIMSS220385
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 0.22 0.22 134 154 .. 137 157 .. 136 162 .. 0.81
2 ! 24.1 0.0 1.4e-09 1.4e-09 20 132 .. 174 279 .. 170 297 .. 0.79
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 0.22
UPF0020 134 rlgskkalekLYseflrelkr 154
r ++ ++ +LY+++lr l++
VIMSS220385 137 RAQERHEFGNLYEQLLRDLQN 157
6778888899*****999876 PP
== domain 2 score: 24.1 bits; conditional E-value: 1.4e-09
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr. 116
+vr+ + k e+ +DP CG+G++l a +++++ ++ae e +++++g+++++ a +N g++ +++ + + +
VIMSS220385 174 MVRMVDPKLAEKVMDPACGTGGFLTCAIEHKRRRY-----------VKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEVPSQIRHDNTLSKPl 260
9***********************87777777777...........3456666668888******998777777777777777766666655444334 PP
UPF0020 117 ...lkegevdvivtnpPYG 132
+++ v iv+npP+G
VIMSS220385 261 iswGPSERVHCIVANPPFG 279
48878889**********9 PP
Or compare VIMSS220385 to CDD or PaperBLAST