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Align VIMSS220385 to PF01170 (UPF0020)

VIMSS220385 has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-10   25.3   0.0    1.7e-09   23.8   0.0    1.7  2  VIMSS220385  


Domain annotation for each sequence (and alignments):
>> VIMSS220385  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.21      0.21     134     154 ..     137     157 ..     136     162 .. 0.82
   2 !   23.8   0.0   1.7e-09   1.7e-09      20     132 ..     174     279 ..     170     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.21
                  ----HHHHHHHHHHHHHHHHH CS
      UPF0020 134 rlgskkalekLYseflrelkr 154
                  r ++ ++  +LY+++lr l++
  VIMSS220385 137 RAQERHEFGNLYEQLLRDLQN 157
                  6778888999*****999886 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.7e-09
                  HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--. CS
      UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr. 116
                  +vr+ + k  e+ +DP CG+G++l  a   +++++            ++ae e   +++++g+++++     a +N    g++   +++  +  + + 
  VIMSS220385 174 MVRMVDPKLAEKVMDPACGTGGFLTCAIEHKRRRY-----------VKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEVPSQIRHDNTLSKPl 260
                  9***********************87777777777...........3456666667888******998777777777777777766666655444334 PP

                  ...STTS---EEEE----- CS
      UPF0020 117 ...lkegevdvivtnpPYG 132
                      +++ v  iv+npP+G
  VIMSS220385 261 iswGPSERVHCIVANPPFG 279
                  48878889**********9 PP



Or compare VIMSS220385 to CDD or PaperBLAST