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Align VIMSS2232773 to PF01170 (UPF0020)

VIMSS2232773 has 495 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-12   31.9   0.1    3.1e-11   29.4   0.0    2.1  2  VIMSS2232773  


Domain annotation for each sequence (and alignments):
>> VIMSS2232773  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.51      0.51     142     155 ..     160     173 ..     156     178 .. 0.76
   2 !   29.4   0.0   3.1e-11   3.1e-11      20     133 ..     190     294 ..     186     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.51
                   HHHHHHHHHHHHHH CS
       UPF0020 142 ekLYseflrelkrv 155
                    +LY+++lre+   
  VIMSS2232773 160 AHLYESMLREMRDA 173
                   68999999999764 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 3.1e-11
                   HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--.EEEEES-HHHHHHHHHHHHHTT-GGG.EEEEE--GGG CS
       UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdl.iefsqadaak 114
                   +v+  + + ge++lDP CG+G++l+Ea     +               +  ++ ra  + l+g+++++     +  N+   gvg+  i+  +a a +
  VIMSS2232773 190 IVQQVDPRLGEVILDPACGTGGFLVEALE-HLSPK------------VTTTAQLRALHEnLRGIEKKPLPFLLGMMNLVLHGVGQPnITRGNALAES 273
                   678888999*****************843.33332............23445555444459**********************98538888999999 PP

                   --..STTS---EEEE------ CS
       UPF0020 115 Lr..lkegevdvivtnpPYGe 133
                   ++   k   vdvi+tnpP+G 
  VIMSS2232773 274 ITqiSKARRVDVILTNPPFGG 294
                   998656669**********95 PP



Or compare VIMSS2232773 to CDD or PaperBLAST