PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS232603 to PF01170 (UPF0020)

VIMSS232603 has 352 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-27   80.7   0.0      1e-25   76.8   0.0    2.1  1  VIMSS232603  


Domain annotation for each sequence (and alignments):
>> VIMSS232603  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     1e-25     1e-25       1     194 [.     177     344 ..     177     347 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1e-25
                  -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHH CS
      UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaek 98 
                  RgyR++++pa+L++ +A ++++lag  + ++l+DP CG+ t++IEa l   +                           +g+++ r + +gar N  +
  VIMSS232603 177 RGYRVYDHPAALNPVIAQGMLELAG--DPDSLIDPTCGGATVPIEALLRDPETE------------------------AVGVEKFRTHYEGARLNVLA 248
                  9***********************9..6789***************99888888........................69****************** PP

                  TT-GGGEEEEE--GGG--.....STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEEEEETTE CS
      UPF0020  99 agvgdliefsqadaakLr.....lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvkeknvkl 191
                  a+v+ +  + +  a+ L      l++ e+d+ v npPYG ++ + + +++LY+ ++r l+  ++     v +t+ +  + +a+ee  +r  + ++v++
  VIMSS232603 249 ARVDVELYLAD--ATRLFeevpeLRDREFDAAVFNPPYGLKIANPRVVKTLYRGLARVLSDLVSV---VVTVTPRDGWMRAAMEEYGFRLSHDRWVRH 341
                  *9987665555..55443344476677**********************************6666...*****************************9 PP

                  EEE CS
      UPF0020 192 gll 194
                  g+l
  VIMSS232603 342 GGL 344
                  987 PP



Or compare VIMSS232603 to CDD or PaperBLAST