VIMSS232603 has 352 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-27 81.8 0.0 3.9e-26 78.1 0.0 2.1 1 VIMSS232603
Domain annotation for each sequence (and alignments):
>> VIMSS232603
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.1 0.0 3.9e-26 3.9e-26 1 194 [. 177 344 .. 177 347 .. 0.90
Alignments for each domain:
== domain 1 score: 78.1 bits; conditional E-value: 3.9e-26
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaek 98
RgyRv+++pa+L++ +A ++++lag d ++l+DP CG+ t++IEa l + +g++++r + +gar N +
VIMSS232603 177 RGYRVYDHPAALNPVIAQGMLELAG--DPDSLIDPTCGGATVPIEALLRDPETE------------------------AVGVEKFRTHYEGARLNVLA 248
9***********************9..6789***************99888888........................69****************** PP
UPF0020 99 agvgdliefsqadaakLr.....lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvkl 191
a+v+ + + + a+ L l++ e+d+ v npPYG ++ + + +++LY+ ++r l+ ++ v +t+ + + +a+ee +r + ++v++
VIMSS232603 249 ARVDVELYLAD--ATRLFeevpeLRDREFDAAVFNPPYGLKIANPRVVKTLYRGLARVLSDLVSV---VVTVTPRDGWMRAAMEEYGFRLSHDRWVRH 341
*9987666655..44443344476677**********************************7666...*****************************9 PP
UPF0020 192 gll 194
g+l
VIMSS232603 342 GGL 344
987 PP
Or compare VIMSS232603 to CDD or PaperBLAST