VIMSS239304 has 507 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-10 27.0 0.0 6.5e-10 25.1 0.0 1.9 1 VIMSS239304
Domain annotation for each sequence (and alignments):
>> VIMSS239304
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.1 0.0 6.5e-10 6.5e-10 21 134 .. 182 285 .. 178 293 .. 0.81
Alignments for each domain:
== domain 1 score: 25.1 bits; conditional E-value: 6.5e-10
UPF0020 21 vrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefs.qadaakL 115
v+l + + ge +DP CG+ ++l+Ea l ++ + e+ r +e ++g ++++ + N gv+ ++ + ++
VIMSS239304 182 VELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKE-------------RTIEDHRilQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRrNTLEENI 266
7899999******************988776666.............3344444457777*******************9999987666514556789 PP
UPF0020 116 rlkegevdvivtnpPYGer 134
r+ ++ +dv+vtnpP+G
VIMSS239304 267 RNVSERFDVVVTNPPFGGT 285
988889***********65 PP
Or compare VIMSS239304 to CDD or PaperBLAST