PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS239304 to PF01170 (UPF0020)

VIMSS239304 has 507 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-10   26.8   0.0    8.4e-10   24.8   0.0    1.9  1  VIMSS239304  


Domain annotation for each sequence (and alignments):
>> VIMSS239304  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.4e-10   8.4e-10      21     134 ..     182     285 ..     178     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.4e-10
                  HHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE.--GGG- CS
      UPF0020  21 vrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefsq.adaakL 115
                  v+l + + ge  +DP CG+ ++l+Ea l  ++               +  e+ r  +e  ++g ++++     +  N    gv+    ++      ++
  VIMSS239304 182 VELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKE-------------RTIEDHRilQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRnTLEENI 266
                  7899999******************988776666.............3444555457777******************99999987666551556788 PP

                  -STTS---EEEE------- CS
      UPF0020 116 rlkegevdvivtnpPYGer 134
                  r+ ++ +dv+vtnpP+G  
  VIMSS239304 267 RNVSERFDVVVTNPPFGGT 285
                  888889***********65 PP



Or compare VIMSS239304 to CDD or PaperBLAST