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Align VIMSS24037 to PF01170 (UPF0020)

VIMSS24037 has 392 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-73  231.6   0.0    4.6e-73  231.2   0.0    1.2  1  VIMSS24037  


Domain annotation for each sequence (and alignments):
>> VIMSS24037  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   0.0   4.6e-73   4.6e-73       1     196 [.     192     385 ..     192     386 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.2 bits;  conditional E-value: 4.6e-73
                 -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH...HH--EEEEES-HHHHHHHHHHH CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear...aelklygsDldrrvvqgareNa 96 
                 R++R++n+pa+L++++A++++r+a+wk +e+l+DPmCGsGti+IEaal+++n++  +lr+f++++++e+e +++   ++lklyg+++ r+++ ga +Na
  VIMSS24037 192 RWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAALMVRNVP--NLRDFAYKKLCEWELAFEpneVRLKLYGMEKFRKHLVGAIRNA 288
                 99****************************************************..9***************998778888****************** PP

                 HHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEEEEETTEEEEE CS
     UPF0020  97 ekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvkeknvklglll 195
                  +agv+d+ief+q da++++   ge+dvi+tnpPYG r+++k+a+e+LY++f+r++kr++++++rlv++t+e++ +++a+ee+ l++++e++vk+g+ll
  VIMSS24037 289 VNAGVADTIEFRQGDATEMT---GEYDVIITNPPYGLRIHRKGAIERLYHSFARAAKRCMNQNSRLVIITAEHRVFANAAEEAGLQCTHERFVKYGGLL 384
                 *****************777...89***********************************************************************998 PP

                 E CS
     UPF0020 196 k 196
                 +
  VIMSS24037 385 T 385
                 6 PP



Or compare VIMSS24037 to CDD or PaperBLAST