VIMSS24037 has 392 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-74 234.6 0.0 5.6e-74 234.2 0.0 1.2 1 VIMSS24037
Domain annotation for each sequence (and alignments):
>> VIMSS24037
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 234.2 0.0 5.6e-74 5.6e-74 1 196 [. 192 385 .. 192 386 .. 0.98
Alignments for each domain:
== domain 1 score: 234.2 bits; conditional E-value: 5.6e-74
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear...aelklygsDldrrvvqgareNa 96
R++Rv+n+pa+L++++A++++r+a+wk +e+l+DPmCGsGti+IEaal+++n++ +lr+f+y++++e+e +++ ++lklyg++++r+++ ga +Na
VIMSS24037 192 RWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAALMVRNVP--NLRDFAYKKLCEWELAFEpneVRLKLYGMEKFRKHLVGAIRNA 288
99****************************************************..9***************998778888****************** PP
UPF0020 97 ekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklglll 195
+agv+d+ief+q da++++ ge+dvi+tnpPYG r+++k+a+e+LY++f+r++kr++++++rlv++tae++ +++a+ee+ l++++e++vk+g+ll
VIMSS24037 289 VNAGVADTIEFRQGDATEMT---GEYDVIITNPPYGLRIHRKGAIERLYHSFARAAKRCMNQNSRLVIITAEHRVFANAAEEAGLQCTHERFVKYGGLL 384
*****************666...89***********************************************************************998 PP
UPF0020 196 k 196
+
VIMSS24037 385 T 385
7 PP
Or compare VIMSS24037 to CDD or PaperBLAST