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Align VIMSS30267 to PF01170 (UPF0020)

VIMSS30267 has 329 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-31   94.5   0.0    4.3e-30   91.0   0.0    2.1  1  VIMSS30267  


Domain annotation for each sequence (and alignments):
>> VIMSS30267  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   4.3e-30   4.3e-30       3     182 ..     157     307 ..     155     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 4.3e-30
                 SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT- CS
     UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagv 101
                 +R+f  p +L +++A+a+v+l+++  ++  lDP+ G+G++lIEa+l+g +++                          g+D+ + +v+ga+ N+e++g+
  VIMSS30267 157 RRPFSRPIALPPRIARAMVNLTKA--TREVLDPFMGTGGMLIEAGLIGLKVY--------------------------GLDIREDMVEGAKINLEYYGI 227
                 8********************966..5679********************99..........................********************* PP

                 GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESE CS
     UPF0020 102 gdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleeralr 182
                  d + +++ da+k++   + + +++++t+pPYG++++   + ++LY+  l+++++vl+g  rl+++++++ +  +++e+  ++
  VIMSS30267 228 RDYV-VKVGDATKIEevFPGKTFEAVATDPPYGNSTTLPMDRNELYKRSLESIHSVLEG--RLAIAFPADFDARDVAESIGFK 307
                 **98.5777******7756679************************************9..*******999999888876555 PP



Or compare VIMSS30267 to CDD or PaperBLAST