PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS302891 to PF01170 (UPF0020)

VIMSS302891 has 702 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-74  233.9   0.0    2.2e-69  219.3   0.0    2.3  2  VIMSS302891  


Domain annotation for each sequence (and alignments):
>> VIMSS302891  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   2.2e-69   2.2e-69       1     196 [.     162     375 ..     162     376 .. 0.97
   2 !   12.4   0.0   5.1e-06   5.1e-06      79     169 ..     564     657 ..     532     668 .. 0.83

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 2.2e-69
                  -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH...HH--..EE CS
      UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear...aelk..ly 80 
                  RgyR+++g ap+ketLAaa+v+++gw+pg+pllDPmCGsGt+lIEaa+l++++apgl+r ++++             +kaea+++ar   ae++  +y
  VIMSS302891 162 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwtqhdeaiwqeVKAEAQTRARkglAEYSshFY 259
                  9****************************************************************************9999999999988666677** PP

                  EEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC CS
      UPF0020  81 gsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekal 176
                  gsD+d+rv+q+ar+Na+ ag+g+li+f++ d+a+L   l++g ++++++npPYGerl+s++al +L+s ++r +k+++ g  ++++l+s++ +l ++l
  VIMSS302891 260 GSDSDARVIQRARTNARLAGIGELITFEVNDVAQLAnpLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCL 355
                  ***********************************9999***************************************99..**************** PP

                  ---ESEEEEEEETTEEEEEE CS
      UPF0020 177 eeralrkvkeknvklglllk 196
                  + ra +++k+kn++l++++k
  VIMSS302891 356 QLRADKQYKAKNGPLDCVQK 375
                  *****************997 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-06
                  EEEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--G.GG--STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESS CS
      UPF0020  79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltsen 169
                     +D+ r +++ a++N++  g++++ + + qad  a Lr++++++d+i  +pP     +r++++ ++++ + ++++ lkr lr gg   +++s+n
  VIMSS302891 564 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657
                  5679******************9988653677776256889999**********6444689999999*****************944..4444444 PP



Or compare VIMSS302891 to CDD or PaperBLAST