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Align VIMSS307152 to PF01170 (UPF0020)

VIMSS307152 has 507 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-13   36.6   0.0    4.6e-13   35.4   0.0    1.6  1  VIMSS307152  


Domain annotation for each sequence (and alignments):
>> VIMSS307152  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.6e-13   4.6e-13      18     170 ..     190     341 ..     186     362 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.6e-13
                  HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--G..G CS
      UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqada..a 113
                  + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  ++++  +   +
  VIMSS307152 190 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIRHDNTlnK 276
                  67999*********************66666666666...........2344444556777*******998889999999999988888887665115 PP

                  G--STTS---EEEE----------........HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
      UPF0020 114 kLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltsenk 170
                   L   +++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++  
  VIMSS307152 277 PLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGT 341
                  56677779***********6533211111111333455556677777888888888887777655 PP



Or compare VIMSS307152 to CDD or PaperBLAST