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Align VIMSS310135 to PF01170 (UPF0020)

VIMSS310135 has 496 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-10   27.8   0.0    2.7e-10   26.4   0.0    1.7  1  VIMSS310135  


Domain annotation for each sequence (and alignments):
>> VIMSS310135  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.7e-10   2.7e-10      18     134 ..     172     279 ..     168     345 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.7e-10
                  HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG- CS
      UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakL 115
                  + +v++ + k ge+++DP CG+G++l   a    ++    +        + a  ++  + ++ g+++++     + +N    g++  ++++  +  + 
  VIMSS310135 172 RFIVNRLDPKLGEQIMDPACGTGGFL---ACSFDHVKENYV--------TSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEVPVQIKHGNTLNK 258
                  56899999*****************9...555666662222........233333335556********999999****9999999999999887665 PP

                  -..STTS---EEEE------- CS
      UPF0020 116 r..lkegevdvivtnpPYGer 134
                  +    +++++vi+tnpP+G  
  VIMSS310135 259 PlsSWDSNINVIATNPPFGGT 279
                  533666789**********64 PP



Or compare VIMSS310135 to CDD or PaperBLAST