VIMSS310135 has 496 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.3e-11 28.2 0.0 1.9e-10 26.9 0.0 1.7 1 VIMSS310135
Domain annotation for each sequence (and alignments):
>> VIMSS310135
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.0 1.9e-10 1.9e-10 18 134 .. 172 279 .. 168 344 .. 0.72
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.9e-10
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakL 115
+ +v++ + k ge+++DP CG+G++l a + ++ + + a ++ + ++ g+++++ + +N g++ ++++ + +
VIMSS310135 172 RFIVNRLDPKLGEQIMDPACGTGGFL---ACSFDHVKENYV--------TSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEVPVQIKHGNTLNK 258
56899999*****************9...555666662222........233333335556********99999*****9999999999999887655 PP
UPF0020 116 r..lkegevdvivtnpPYGer 134
+ +++++vi+tnpP+G
VIMSS310135 259 PlsSWDSNINVIATNPPFGGT 279
533666789**********64 PP
Or compare VIMSS310135 to CDD or PaperBLAST