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Align VIMSS335309 to PF01170 (UPF0020)

VIMSS335309 has 762 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-52  161.6   0.0    3.5e-47  146.8   0.0    2.3  2  VIMSS335309  


Domain annotation for each sequence (and alignments):
>> VIMSS335309  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.0   3.5e-47   3.5e-47       1     194 [.     177     392 ..     177     394 .. 0.92
   2 !   12.5   0.0   4.7e-06   4.7e-06      75     130 ..     622     678 ..     588     687 .. 0.80

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 3.5e-47
                  -SSS-SS---SS-HHHHHHHHHHTT-....-TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH....HH- CS
      UPF0020   1 RgyRefngpapLketLAaalvrlagw....kpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear....ael 77 
                  RgyR  +g apLke+LAaa++ +agw     +g  l+DPmCG Gt+l+Ea++++a+iap   re++++             l++ea ++a+    ++ 
  VIMSS335309 177 RGYRLQQGAAPLKENLAAAILIRAGWpriaAEGGALADPMCGVGTFLVEAGMIAADIAPNIKRERWGFsawlghvptlwrkLHDEALARAEaglaKTP 274
                  9*************************5554579**********************************************9955555555554441444 PP

                  -.EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHH CS
      UPF0020  78 k.lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkal 172
                  + ++g + d+r++q +r+N e+ag++d i+++q ++a ++   ++++ +++++npPYGerlg++ +l  LY++++++l + + +  + ++++++  +l
  VIMSS335309 275 SwIRGYEADPRLIQPGRNNIERAGLSDWIKVYQGEVATFEprPDQNQKGLVICNPPYGERLGDEASLLYLYQNLGERLRQACLN--WEAAVFTGAPDL 370
                  49**************************************96555699************************************..************ PP

                  HHCC---ESEEEEEEETTEEEE CS
      UPF0020 173 ekaleeralrkvkeknvklgll 194
                   k ++ r+ +++   n+ l + 
  VIMSS335309 371 GKRMGIRSHKQYSFWNGALPCK 392
                  *************999999986 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.7e-06
                  HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG.--STTS---EEEE--- CS
      UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaak.LrlkegevdvivtnpP 130
                     +   +Dl r +++ ar+N++  g +d+  ++q d+ + L+++++e+d+i  +pP
  VIMSS335309 622 GARSTTSVDLSRTYLDWARRNLSLNGFSDKNRLEQGDVMAwLQANRDEYDLIFIDPP 678
                  44457899*****************************9763778888*********9 PP



Or compare VIMSS335309 to CDD or PaperBLAST