VIMSS36497 has 518 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-11 28.8 0.1 3.1e-10 26.2 0.0 2.2 2 VIMSS36497
Domain annotation for each sequence (and alignments):
>> VIMSS36497
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.2 0.0 3.1e-10 3.1e-10 76 139 .. 156 218 .. 146 227 .. 0.84
2 ? -1.1 0.0 0.073 0.073 137 177 .. 427 467 .. 420 475 .. 0.80
Alignments for each domain:
== domain 1 score: 26.2 bits; conditional E-value: 3.1e-10
UPF0020 76 elklygsDldrrvvqgareNaekagvgdliefsqad.aakLrlkegevdvivtnpPYGerlgskk 139
+ ++++ D+ +++ a++N k++v+d+i++ + + kL ++++d iv+npPY +++ k
VIMSS36497 156 NTNIIATDISVDAIKVAKSNSIKYNVTDRIQIIHSNwFEKLD--KQKFDFIVSNPPYISHTEKLK 218
55699**************************99887356666..568**********88777655 PP
== domain 2 score: -1.1 bits; conditional E-value: 0.073
UPF0020 137 skkalekLYseflrelkrvlrgggrlvlltaenkalekale 177
+kk+++ + +e l+ l++ l+++g lv++ ++ + +a++
VIMSS36497 427 KKKKKRIFNKERLKILQNKLKNNGNLVFASDIENYFYEAMA 467
34555777889999999999999999999888888877775 PP
Or compare VIMSS36497 to CDD or PaperBLAST